import numpy as np
from scipy import spatial
import pandas as pd
import matplotlib.pyplot as plt

num_points = 25

points_coordinate = np.random.rand(num_points, 2)  # generate coordinate of points
distance_matrix = spatial.distance.cdist(points_coordinate, points_coordinate, metric=\'euclidean\')


def cal_total_distance(routine):
    num_points, = routine.shape
    return sum([distance_matrix[routine[i % num_points], routine[(i + 1) % num_points]] for i in range(num_points)])


from sko.ACA import ACA_TSP

aca = ACA_TSP(func=cal_total_distance, n_dim=num_points,
              size_pop=50, max_iter=200,
              distance_matrix=distance_matrix)

best_x, best_y = aca.run()

# %% Plot
fig, ax = plt.subplots(1, 2)
best_points_ = np.concatenate([best_x, [best_x[0]]])
best_points_coordinate = points_coordinate[best_points_, :]
ax[0].plot(best_points_coordinate[:, 0], best_points_coordinate[:, 1], \'o-r\')
pd.DataFrame(aca.y_best_history).cummin().plot(ax=ax[1])
plt.show()

# -*- coding: utf-8 -*-
import random
import copy
import time
import sys
import math
import tkinter #//GUI模块
import threading
from functools import reduce
 
 
# 参数
\'\'\'
ALPHA:信息启发因子，值越大，则蚂蚁选择之前走过的路径可能性就越大
      ，值越小，则蚁群搜索范围就会减少，容易陷入局部最优
BETA:Beta值越大，蚁群越就容易选择局部较短路径，这时算法收敛速度会
     加快，但是随机性不高，容易得到局部的相对最优
\'\'\'
(ALPHA, BETA, RHO, Q) = (1.0,2.0,0.5,100.0)
# 城市数，蚁群
(city_num, ant_num) = (50,50)
distance_x = [
    178,272,176,171,650,499,267,703,408,437,491,74,532,
    416,626,42,271,359,163,508,229,576,147,560,35,714,
    757,517,64,314,675,690,391,628,87,240,705,699,258,
    428,614,36,360,482,666,597,209,201,492,294]
distance_y = [
    170,395,198,151,242,556,57,401,305,421,267,105,525,
    381,244,330,395,169,141,380,153,442,528,329,232,48,
    498,265,343,120,165,50,433,63,491,275,348,222,288,
    490,213,524,244,114,104,552,70,425,227,331]
#城市距离和信息素
distance_graph = [ [0.0 for col in range(city_num)] for raw in range(city_num)]
pheromone_graph = [ [1.0 for col in range(city_num)] for raw in range(city_num)]
 
 
 
#----------- 蚂蚁 -----------
class Ant(object):
 
    # 初始化
    def __init__(self,ID):
        
        self.ID = ID                 # ID
        self.__clean_data()          # 随机初始化出生点
 
    # 初始数据
    def __clean_data(self):
    
        self.path = []               # 当前蚂蚁的路径           
        self.total_distance = 0.0    # 当前路径的总距离
        self.move_count = 0          # 移动次数
        self.current_city = -1       # 当前停留的城市
        self.open_table_city = [True for i in range(city_num)] # 探索城市的状态
        
        city_index = random.randint(0,city_num-1) # 随机初始出生点
        self.current_city = city_index
        self.path.append(city_index)
        self.open_table_city[city_index] = False
        self.move_count = 1
    
    # 选择下一个城市
    def __choice_next_city(self):
        
        next_city = -1
        select_citys_prob = [0.0 for i in range(city_num)]  #存储去下个城市的概率
        total_prob = 0.0
 
        # 获取去下一个城市的概率
        for i in range(city_num):
            if self.open_table_city[i]:
                try :
                    # 计算概率：与信息素浓度成正比，与距离成反比
                    select_citys_prob[i] = pow(pheromone_graph[self.current_city][i], ALPHA) * pow((1.0/distance_graph[self.current_city][i]), BETA)
                    total_prob += select_citys_prob[i]
                except ZeroDivisionError as e:
                    print (\'Ant ID: {ID}, current city: {current}, target city: {target}\'.format(ID = self.ID, current = self.current_city, target = i))
                    sys.exit(1)
        
        # 轮盘选择城市
        if total_prob > 0.0:
            # 产生一个随机概率,0.0-total_prob
            temp_prob = random.uniform(0.0, total_prob)
            for i in range(city_num):
                if self.open_table_city[i]:
                    # 轮次相减
                    temp_prob -= select_citys_prob[i]
                    if temp_prob < 0.0:
                        next_city = i
                        break
 
        # 未从概率产生，顺序选择一个未访问城市
        # if next_city == -1:
        #     for i in range(city_num):
        #         if self.open_table_city[i]:
        #             next_city = i
        #             break
 
        if (next_city == -1):
            next_city = random.randint(0, city_num - 1)
            while ((self.open_table_city[next_city]) == False):  # if==False,说明已经遍历过了
                next_city = random.randint(0, city_num - 1)
 
        # 返回下一个城市序号
        return next_city
    
    # 计算路径总距离
    def __cal_total_distance(self):
        
        temp_distance = 0.0
 
        for i in range(1, city_num):
            start, end = self.path[i], self.path[i-1]
            temp_distance += distance_graph[start][end]
 
        # 回路
        end = self.path[0]
        temp_distance += distance_graph[start][end]
        self.total_distance = temp_distance
        
    
    # 移动操作
    def __move(self, next_city):
        
        self.path.append(next_city)
        self.open_table_city[next_city] = False
        self.total_distance += distance_graph[self.current_city][next_city]
        self.current_city = next_city
        self.move_count += 1
        
    # 搜索路径
    def search_path(self):
 
        # 初始化数据
        self.__clean_data()
 
        # 搜素路径，遍历完所有城市为止
        while self.move_count < city_num:
            # 移动到下一个城市
            next_city =  self.__choice_next_city()
            self.__move(next_city)
 
        # 计算路径总长度
        self.__cal_total_distance()
 
#----------- TSP问题 -----------
        
class TSP(object):
 
    def __init__(self, root, width = 800, height = 600, n = city_num):
 
        # 创建画布
        self.root = root                               
        self.width = width      
        self.height = height
        # 城市数目初始化为city_num
        self.n = n
        # tkinter.Canvas
        self.canvas = tkinter.Canvas(
                root,
                width = self.width,
                height = self.height,
                bg = "#EBEBEB",             # 背景白色 
                xscrollincrement = 1,
                yscrollincrement = 1
            )
        self.canvas.pack(expand = tkinter.YES, fill = tkinter.BOTH)
        self.title("TSP蚁群算法(n:初始化 e:开始搜索 s:停止搜索 q:退出程序)")
        self.__r = 5
        self.__lock = threading.RLock()     # 线程锁
 
        self.__bindEvents()
        self.new()
 
        # 计算城市之间的距离
        for i in range(city_num):
            for j in range(city_num):
                temp_distance = pow((distance_x[i] - distance_x[j]), 2) + pow((distance_y[i] - distance_y[j]), 2)
                temp_distance = pow(temp_distance, 0.5)
                distance_graph[i][j] =float(int(temp_distance + 0.5))
 
    # 按键响应程序
    def __bindEvents(self):
 
        self.root.bind("q", self.quite)        # 退出程序
        self.root.bind("n", self.new)          # 初始化
        self.root.bind("e", self.search_path)  # 开始搜索
        self.root.bind("s", self.stop)         # 停止搜索
 
    # 更改标题
    def title(self, s):
 
        self.root.title(s)
 
    # 初始化
    def new(self, evt = None):
 
        # 停止线程
        self.__lock.acquire()
        self.__running = False
        self.__lock.release()
 
        self.clear()     # 清除信息 
        self.nodes = []  # 节点坐标
        self.nodes2 = [] # 节点对象
 
        # 初始化城市节点
        for i in range(len(distance_x)):
            # 在画布上随机初始坐标
            x = distance_x[i]
            y = distance_y[i]
            self.nodes.append((x, y))
            # 生成节点椭圆，半径为self.__r
            node = self.canvas.create_oval(x - self.__r,
                    y - self.__r, x + self.__r, y + self.__r,
                    fill = "#ff0000",      # 填充红色
                    outline = "#000000",   # 轮廓白色
                    tags = "node",
                )
            self.nodes2.append(node)
            # 显示坐标
            self.canvas.create_text(x,y-10,              # 使用create_text方法在坐标（302，77）处绘制文字
                    text = \'(\'+str(x)+\',\'+str(y)+\')\',    # 所绘制文字的内容
                    fill = \'black\'                       # 所绘制文字的颜色为灰色
                )
            
        # 顺序连接城市
        #self.line(range(city_num))
        
        # 初始城市之间的距离和信息素
        for i in range(city_num):
            for j in range(city_num):
                pheromone_graph[i][j] = 1.0
                
        self.ants = [Ant(ID) for ID in range(ant_num)]  # 初始蚁群
        self.best_ant = Ant(-1)                          # 初始最优解
        self.best_ant.total_distance = 1 << 31           # 初始最大距离
        self.iter = 1                                    # 初始化迭代次数 
            
    # 将节点按order顺序连线
    def line(self, order):
        # 删除原线
        self.canvas.delete("line")
        def line2(i1, i2):
            p1, p2 = self.nodes[i1], self.nodes[i2]
            self.canvas.create_line(p1, p2, fill = "#000000", tags = "line")
            return i2
        
        # order[-1]为初始值
        reduce(line2, order, order[-1])
 
    # 清除画布
    def clear(self):
        for item in self.canvas.find_all():
            self.canvas.delete(item)
 
    # 退出程序
    def quite(self, evt):
        self.__lock.acquire()
        self.__running = False
        self.__lock.release()
        self.root.destroy()
        print (u"\n程序已退出...")
        sys.exit()
 
    # 停止搜索
    def stop(self, evt):
        self.__lock.acquire()
        self.__running = False
        self.__lock.release()
        
    # 开始搜索
    def search_path(self, evt = None):
 
        # 开启线程
        self.__lock.acquire()
        self.__running = True
        self.__lock.release()
        
        while self.__running:
            # 遍历每一只蚂蚁
            for ant in self.ants:
                # 搜索一条路径
                ant.search_path()
                # 与当前最优蚂蚁比较
                if ant.total_distance < self.best_ant.total_distance:
                    # 更新最优解
                    self.best_ant = copy.deepcopy(ant)
            # 更新信息素
            self.__update_pheromone_gragh()
            print (u"迭代次数：",self.iter,u"最佳路径总距离：",int(self.best_ant.total_distance))
            # 连线
            self.line(self.best_ant.path)
            # 设置标题
            self.title("TSP蚁群算法(n:随机初始 e:开始搜索 s:停止搜索 q:退出程序) 迭代次数: %d" % self.iter)
            # 更新画布
            self.canvas.update()
            self.iter += 1
 
    # 更新信息素
    def __update_pheromone_gragh(self):
 
        # 获取每只蚂蚁在其路径上留下的信息素
        temp_pheromone = [[0.0 for col in range(city_num)] for raw in range(city_num)]
        for ant in self.ants:
            for i in range(1,city_num):
                start, end = ant.path[i-1], ant.path[i]
                # 在路径上的每两个相邻城市间留下信息素，与路径总距离反比
                temp_pheromone[start][end] += Q / ant.total_distance
                temp_pheromone[end][start] = temp_pheromone[start][end]
 
        # 更新所有城市之间的信息素，旧信息素衰减加上新迭代信息素
        for i in range(city_num):
            for j in range(city_num):
                pheromone_graph[i][j] = pheromone_graph[i][j] * RHO + temp_pheromone[i][j]
 
    # 主循环
    def mainloop(self):
        self.root.mainloop()
 
#----------- 程序的入口处 -----------
                
if __name__ == \'__main__\':
 
    print (u""" 
--------------------------------------------------------
    程序：蚁群算法解决TPS问题程序 
    作者：许彬 
    日期：2015-12-10
    语言：Python 2.7 
-------------------------------------------------------- 
    """)
    TSP(tkinter.Tk()).mainloop()
    

#include<bits/stdc++.h>
using namespace std;

const int INF = 0x3f3f3f3f;
#define sqr(x) ((x)*(x))
#define eps 1e-8
string file_name;
int type;// type == 1 全矩阵, type == 2 二维欧拉距离
int N;//城市数量
double **dis;//城市间距离
double **pheromone;//信息素
double **herustic;//启发式值
double **info;// info = pheromone ^ delta * herustic ^ beta
double pheromone_0;//pheromone初始值，这里是1 / (avg * N)其中avg为图网中所有边边权的平均数。
int m;//种群数量
int delta, beta;//参数
double alpha;
int *r1, *s, *r;//agent k的出发城市，下一个点，当前点。
int MAX, iteration;//最大迭代次数，迭代计数变量
set<int> empty, *J;
struct vertex{
    double x, y;// 城市坐标
    int id;// 城市编号
    int input(FILE *fp){
    return fscanf(fp, "%d %lf %lf", &id, &x, &y);
}
}*node;

typedef pair<int, int> pair_int;
struct Tour{//路径
    vector<pair_int> path;//path[i]，存储一条边(r,s)
    double L;
    void clean(){
        L = INF;
        path.clear();
        path.shrink_to_fit();
    }//清空
    void calc(){
        L = 0;
        int sz = path.size();
        for (int i = 0; i < sz; i ++){
            L += dis[path[i].first][path[i].second];
        }
    }//计算长度
    void push_back(int x, int y){
        path.push_back(make_pair(x, y));
    }
    int size(){
        return (int)path.size();
    }
    int r(int i){
        return path[i].first;
    }
    int s(int i){
        return path[i].second;
    }
    void print(FILE *fp){
        int sz = path.size();
        for (int i = 0; i < sz; i ++){
            fprintf(fp, "%d->", path[i].first + 1);
        }
        fprintf(fp, "%d\n", path[sz - 1].second + 1);
    }
    bool operator <(const Tour &a)const{
        return L < a.L;
    }//重载
} *tour, best_so_far;

double EUC_2D(const vertex &a, const vertex &b){
      return sqrt(sqr(a.x - b.x) + sqr(a.y - b.y));
}

void io(){//输入
      printf("input file_name and data type\n");
      cin >> file_name >> type;
      FILE *fp = fopen(file_name.c_str(), "r");
      fscanf(fp, "%d", &N);
      node = new vertex[N + 5];
      dis = new double*[N + 5];
      double tmp = 0;
      int cnt = 0;
      if (type == 1){
               for (int i = 0; i < N; i ++){
                    dis[i] = new double[N];
                    for (int j = 0; j < N; j ++){
                          fscanf(fp, "%lf", &dis[i][j]);
                          tmp += i != j ? dis[i][j] : 0;// i == j的时候dis不存在，所以不考虑。
                          cnt += i != j ? 1 : 0;// i == j的时候dis不存在，所以不考虑。
                    }
               }
        }else{
              for (int i = 0; i < N; i ++)
              node[i].input(fp);
              for (int i = 0; i < N; i ++){
                    dis[i] = new double[N];
                    for (int j = 0; j < N; j ++){
                          dis[i][j] = EUC_2D(node[i], node[j]);// 计算距离
                          tmp += i != j ? dis[i][j] : 0;// i == j的时候 dis不存在，所以不考虑。
                          cnt += i != j ? 1 : 0;// i == j的时候dis不存在，所以不考虑。
                     }
              }
       }
        pheromone_0 =  (double)cnt / (tmp * N);//pheromone初始值，这里是1 / (avg * N)其中avg为图网中所有边边权的平均数。
        fclose(fp);
        return;
}

void init(){//初始化
        alpha = 0.1;//evaporation parameter，挥发参数，每次信息素要挥发的量
        delta = 1;
        beta = 6;// delta 和 beta分别表示pheromones和herustic的比重
        m = N;
        pheromone = new double*[N + 5];
        herustic = new double*[N + 5];
        info = new double*[N + 5];
        r1 = new int[N + 5];
        r = new int[N + 5];
        s = new int[N + 5];
        J = new set<int>[N + 5];
        empty.clear();
        for (int i = 0; i < N; i ++){
               pheromone[i] = new double[N + 5];
               herustic[i] = new double[N + 5];
               info[i] = new double[N + 5];
               empty.insert(i);
               for (int j = 0; j < N; j ++){
                      pheromone[i][j] = pheromone_0;
                      herustic[i][j] = 1 / (dis[i][j] + eps);//加一个小数eps，防止被零除
                }
         }
         best_so_far.clean();
         iteration = 0;
         MAX = N * N;
}

double power(double x, int y){//快速幂，计算x ^ y，时间复杂度O(logn),感兴趣可以百度
         double ans = 1;
         while (y){
            if (y & 1) ans *= x;
            x *= x;
            y >>= 1;
          }
         return ans;
}

void reset(){
         tour = new Tour[m + 5];
         for (int i = 0; i < N; i ++){
                tour[i].clean();
                r1[i] = i;//初始化出发城市，
               J[i] = empty;
               J[i].erase(r1[i]);//初始化agent i需要访问的城                市
               r[i] = r1[i];//当前在出发点
         }
         for (int i = 0; i < N; i ++)
         for (int j = 0; j < N; j ++){
              info[i][j] = power(pheromone[i][j], delta) * power(herustic[i][j], beta);
         }//选择公式
}

int select_next(int k){
         if (J[k].empty()) return r1[k]; //如果J是空的，那么返回出发点城市
        double rnd = (double)(rand()) / (double)RAND_MAX;//产生0..1的随机数
        set<int>::iterator it = J[k].begin();
        double sum_prob = 0, sum = 0;
        for (; it != J[k].end(); it ++){
              sum += info[r[k]][*it];
        }//计算概率分布
        rnd *= sum;
        it = J[k].begin();
        for (; it != J[k].end(); it ++){
             sum_prob += info[r[k]][*it];
             if (sum_prob >= rnd){
                    return *it;
             }
         }//依照概率选取下一步城市
}

void construct_solution(){
       for (int i = 0; i < N; i ++){
            for (int k = 0; k < m; k ++){
                   int next = select_next(k);//选择下一步的最优决策
                   J[k].erase(next);
                   s[k] = next;
                   tour[k].push_back(r[k], s[k]);
                   r[k] = s[k];
             }
       }
}

void update_pheromone(){
       Tour now_best;
       now_best.clean();//初始化
       for (int i = 0; i < m; i ++){
            tour[i].calc();
            if (tour[i] < now_best)
            now_best = tour[i];//寻找当前迭代最优解
       }
       if (now_best < best_so_far){
            best_so_far = now_best;//更新最优解
       }
       for (int i = 0; i < N; i ++)
       for (int j = 0; j < N; j ++)
       pheromone[i][j] *= (1 - alpha);//信息素挥发
       int sz = now_best.size();
       for (int i = 0; i < sz; i ++){
            pheromone[now_best.r(i)][now_best.s(i)] += 1. / (double)now_best.L;
            pheromone[now_best.s(i)][now_best.r(i)] = pheromone[now_best.r(i)][now_best.s(i)];// 对称
       }//更新信息素含量
}

int main(){
       srand((unsigned) time(0));//初始化随机种子
       io();
       init();
       double last = INF;
       int bad_times = 0;
       for (; iteration < MAX; iteration ++){
            if (bad_times > N) break;//进入局部最优
            reset();//初始化agent信息
            construct_solution();//对于所有的agent构造一个完整的tour
            update_pheromone();//更新信息素
            printf("iteration %d:best_so_far = %.2f\n",  iteration, best_so_far.L);
            if (last > best_so_far.L)
            last = best_so_far.L, bad_times = 0;
            else bad_times ++;//记录当前未更新代数，若迭代多次未更新，认为进入局部最优
       }
       printf("best_so_far = %.2f\n", best_so_far.L);// 输出目标值
       best_so_far.print(stdout);//输出路径
}


算例演示
例一    满秩矩阵式（type = 1）
输入文件格式为：
File_name            File_type
salesman.in          1
5
0 1 2 2 3
2 0 3 4 2
3 2 0 4 1
3 4 5 0 5
2 4 1 4 0
输出结果为：
opt_solution:
11

例二    二维坐标式（type = 2）
输入文件格式为：
File_name               File_type
KroA100.tsp            2
100
1 1380 939
2 2848 96
3 3510 1671
4 457 334
5 3888 666
6 984 965
7 2721 1482
8 1286 525
9 2716 1432
10 738 1325
11 1251 1832
12 2728 1698
13 3815 169
14 3683 1533
15 1247 1945
16 123 862
17 1234 1946
18 252 1240
19 611 673
20 2576 1676
21 928 1700
22 53 857
23 1807 1711
24 274 1420
25 2574 946
26 178 24
27 2678 1825
28 1795 962
29 3384 1498
30 3520 1079
31 1256 61
32 1424 1728
33 3913 192
34 3085 1528
35 2573 1969
36 463 1670
37 3875 598
38 298 1513
39 3479 821
40 2542 236
41 3955 1743
42 1323 280
43 3447 1830
44 2936 337
45 1621 1830
46 3373 1646
47 1393 1368
48 3874 1318
49 938 955
50 3022 474
51 2482 1183
52 3854 923
53 376 825
54 2519 135
55 2945 1622
56 953 268
57 2628 1479
58 2097 981
59 890 1846
60 2139 1806
61 2421 1007
62 2290 1810
63 1115 1052
64 2588 302
65 327 265
66 241 341
67 1917 687
68 2991 792
69 2573 599
70 19 674
71 3911 1673
72 872 1559
73 2863 558
74 929 1766
75 839 620
76 3893 102
77 2178 1619
78 3822 899
79 378 1048
80 1178 100
81 2599 901
82 3416 143
83 2961 1605
84 611 1384
85 3113 885
86 2597 1830
87 2586 1286
88 161 906
89 1429 134
90 742 1025
91 1625 1651
92 1187 706
93 1787 1009
94 22 987
95 3640 43
96 3756 882
97 776 392
98 1724 1642
99 198 1810
100 3950 1558
输出结果为：
best_known_solution: 21282